Lobos in MLB/MiLB organizations
| Name | Current Organization | Years at UNM | Draft Year – Round | Status | Baseball Reference Profile |
| DJ Peterson | Colorado Rockies | 2011-2013 | 2013-1 | Albuquerque (AAA) | Link |
| Mitch Garver | Seattle Mariners | 2011-13 | 2013-9 | Seattle Mariners (MLB) | Link |
| Sam Haggerty | Seattle Mariners | 2013-15 | 2015-24 | Seattle Mariners (MLB) | Link |
| Luis Gonzalez | New York Yankees | 2015-17 | 2017-3 | New York Yankees (MLB) | Link |
| Christian Tripp | Milwaukee Brewers | 2016-18 | 2018-13 | Carolina Mudcats (A) | Link |
| Justin Slaten | Boston Red Sox | 2017-19 | 2019-3 | Boston Red Sox (MLB) | Link |
| Mack Chambers | St. Louis Cardinals | 2021 | 2021-11 | Peoria Chiefs (A+) | Link |
| Justin Armbruester | Baltimore Orioles | 2020-21 | 2021-12 | Norfolk Tides (AAA) | Link |
| Jarrett Gonzales | Washington Nationals | 2020-21 | 2021 UDFA | Harrisburg Senators (AA) | Link |
| Kyler Castillo | Miami Marlins | 2020-21 | 2021 UDFA | Pensacola Blue Wahoos (A+) | Link |
| Isaac Gallegos | Atlanta Braves | 2023 | 2023-16 | Florida Braves (FCL) | Link |
Lobos in Independent/Partner/Other Professional Leagues
| Name | Current Organization | Years at UNM | Other Pro Info | Baseball Reference Profile |
| Gera Sanchez | Diablos Rojos de Mexico (LMB) | 2011-12 | Signed by Astros as UDFA in 2012 | Link |
| Chase Harris | Sioux City Explorers (AA) | 2013-14 | 2014-14th Round pick by Phillies | Link |
| Johnathon Tripp | Cleburne Railroaders (AA) | 2017 | Played in indy leagues since 2017 | Link |
| Harry Fullerton | Canberra Cavalry (AUBL) | 2020-21 | Signed with Miners in 2022 | Link |
| Kamron Willman | Missoula Paddleheads (PL) | 2022 | Signed with Paddleheads in 2022 | Link |
| Miguel Reyes Jr. | Schaumburg Boomers (FL) | 2020-22 | Signed with Boomers in 2022 | Link |
UDFA = Undrafted Free Agent designates that the player was signed to a major league or minor league contract in a professional organization, outside of draft signings.
LMB = Liga Mexicana de Beisbol is a professional summer league played across Mexico. It is an independent league with Triple-A classification.
AA = American Association of Professional Baseball is a professional independent baseball league which is an official MLB Partner League.
FL = Frontier League is a professional independent baseball league that is an official MLB Partner League.
PL = Pioneer League is a professional independent baseball league which isn’t directly affiliated with MLB but is designated as an MLB Partner League.